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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc10g012190.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g012190.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g012190.1.1annotation not available (687 aa)    
Predicted Functional Partners:
101254120
annotation not available (606 aa)
     
 
0.892
Solyc07g008340.2.1
annotation not available (578 aa)
     
 
0.892
cdc5
CDC5-like protein (987 aa)
     
 
  0.874
Solyc02g069140.1.1
annotation not available (1041 aa)
     
      0.865
LARS
annotation not available (1079 aa)
     
      0.865
Solyc01g109360.2.1
annotation not available (328 aa)
   
        0.863
Solyc06g082580.2.1
annotation not available (303 aa)
     
   
  0.851
101267059
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (717 aa)
     
 
  0.817
101263723
Uncharacterized protein; methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; Belongs to the class-I aminoacyl-tRNA synthetase family (812 aa)
   
   
  0.784
101260717
Uncharacterized protein; Peroxisomal ABC transporter 1 (1344 aa)
     
   
  0.762
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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