• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc10g033560.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g033560.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g033560.1.1annotation not available (255 aa)    
Predicted Functional Partners:
Solyc08g082740.2.1
Signal recognition particle 19 kDa protein, putative / SRP19, putative (213 aa)
     
 
  0.925
Solyc04g048930.1.1
annotation not available (81 aa)
     
 
  0.904
101245529
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (602 aa)
     
 
  0.904
Solyc02g062840.1.1
annotation not available (97 aa)
     
 
  0.904
Solyc02g062830.1.1
annotation not available (149 aa)
     
 
  0.904
101264998
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane (602 aa)
     
 
  0.904
101254464
Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding (103 aa)
     
 
  0.876
cdc5
CDC5-like protein (987 aa)
     
      0.821
LOC544156
Signal recognition particle 54 kDa protein 2; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein); Belongs to the GTP-binding SRP family. SRP54 subfamily (499 aa)
     
 
  0.793
Solyc03g116810.2.1
Signal recognition particle 54 kDa protein 1; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein); Belongs to the GTP-binding SRP family. SRP54 subfamily (590 aa)
     
 
  0.793
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (14%) [HD]