STRINGSTRING
Solyc10g049440.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g049440.1.1" - Pectinesterase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g049440.1.1Pectinesterase (67 aa)    
Predicted Functional Partners:
Solyc10g083810.1.1
Pectinesterase (265 aa)
   
          0.522
Solyc11g051010.1.1
Pectinesterase (137 aa)
   
          0.507
Solyc01g066370.2.1
Pectinesterase (142 aa)
   
          0.490
Solyc10g083820.1.1
Pectinesterase (148 aa)
   
          0.489
Solyc01g067410.1.1
Pectinesterase (242 aa)
   
          0.455
Solyc10g049430.1.1
Pectinesterase (103 aa)
   
          0.416
Solyc01g090130.1.1
Pectinesterase (127 aa)
   
          0.410
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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