STRINGSTRING
Solyc10g049890.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g049890.1.1" - D-3-phosphoglycerate dehydrogenase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g049890.1.1D-3-phosphoglycerate dehydrogenase (595 aa)    
Predicted Functional Partners:
Solyc02g082830.1.1
Phosphoserine aminotransferase (432 aa)
   
  0.998
Solyc04g050420.1.1
Uncharacterized protein (128 aa)
     
 
  0.986
Solyc03g120430.2.1
Uncharacterized protein (452 aa)
         
    0.916
Solyc06g074510.2.1
Uncharacterized protein (509 aa)
   
 
  0.911
Solyc02g065080.2.1
Uncharacterized protein (303 aa)
   
 
  0.910
Solyc07g044840.2.1
Uncharacterized protein (559 aa)
   
 
  0.908
Solyc04g072800.2.1
Uncharacterized protein (239 aa)
       
  0.907
Solyc04g054820.2.1
Uncharacterized protein (343 aa)
       
  0.907
Solyc03g123830.2.1
D-3-phosphoglycerate dehydrogenase (627 aa)
   
0.832
Solyc03g112070.2.1
D-3-phosphoglycerate dehydrogenase (600 aa)
   
   
 
0.801
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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