STRINGSTRING
Solyc10g052730.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g052730.1.1" - Pectinesterase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g052730.1.1Pectinesterase (171 aa)    
Predicted Functional Partners:
Solyc10g083820.1.1
Pectinesterase (148 aa)
   
          0.520
Solyc09g091730.2.1
Pectinesterase (343 aa)
   
          0.515
Solyc12g099230.1.1
Pectinesterase (342 aa)
   
          0.513
Solyc05g053680.1.1
Pectinesterase (341 aa)
   
          0.512
Solyc12g098340.1.1
Pectinesterase (334 aa)
   
          0.510
Solyc10g083810.1.1
Pectinesterase (265 aa)
   
          0.507
Solyc01g066410.1.1
Pectinesterase (210 aa)
   
          0.467
Solyc01g090130.1.1
Pectinesterase (127 aa)
   
          0.453
Solyc10g049450.1.1
Pectinesterase (113 aa)
   
          0.429
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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