STRINGSTRING
Solyc10g053900.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g053900.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g053900.1.1Uncharacterized protein (569 aa)    
Predicted Functional Partners:
Solyc05g005780.2.1
Uncharacterized protein (879 aa)
       
  0.545
Solyc04g025870.2.1
Uncharacterized protein (877 aa)
       
  0.545
Solyc07g045380.2.1
Uncharacterized protein (568 aa)
         
  0.482
Solyc06g051310.2.1
Clathrin heavy chain ; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1701 aa)
         
  0.480
Solyc05g052510.2.1
Clathrin heavy chain ; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1706 aa)
         
  0.480
Solyc03g096000.2.1
Clathrin heavy chain ; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
         
  0.480
Solyc09g098600.2.1
Uncharacterized protein (305 aa)
       
 
  0.473
Solyc02g085300.2.1
Uncharacterized protein (216 aa)
       
 
  0.473
Solyc07g008920.2.1
Uncharacterized protein (383 aa)
       
 
  0.464
Solyc08g081320.2.1
Beta-adaptin-like protein ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (896 aa)
       
    0.462
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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