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STRINGSTRING
Solyc10g053900.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g053900.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g053900.1.1annotation not available (569 aa)    
Predicted Functional Partners:
101263185
Uncharacterized protein; Gamma-glutamyl transpeptidase 4 (630 aa)
           
  0.489
101250409
annotation not available (581 aa)
           
  0.489
101265450
annotation not available (383 aa)
       
 
  0.472
Solyc12g019480.1.1
annotation not available (888 aa)
     
   
  0.439
101254726
annotation not available (909 aa)
     
   
  0.439
101249109
annotation not available (757 aa)
     
   
  0.439
101260547
annotation not available (936 aa)
     
   
  0.439
101055529
Hop-interacting protein THI111 (407 aa)
     
   
  0.436
101253644
annotation not available (529 aa)
           
  0.400
101264271
annotation not available (533 aa)
           
  0.400
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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