STRINGSTRING
Solyc10g054110.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g054110.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g054110.1.1Uncharacterized protein (375 aa)    
Predicted Functional Partners:
Solyc10g045620.1.1
Uncharacterized protein (339 aa)
           
  0.929
Solyc01g095820.2.1
Uncharacterized protein (133 aa)
           
  0.929
Solyc04g082410.2.1
Uncharacterized protein (322 aa)
           
  0.526
Solyc00g304030.1.1
Annotation not available (1080 aa)
   
   
  0.515
Solyc02g032850.2.1
Uncharacterized protein (578 aa)
           
  0.503
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
         
  0.494
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
           
  0.479
PRO2
Delta-1-pyrroline-5-carboxylate synthase Glutamate 5-kinase Gamma-glutamyl phosphate reductase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants (720 aa)
         
  0.470
Solyc06g019170.2.1
Uncharacterized protein (717 aa)
         
  0.470
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
           
  0.455
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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