STRINGSTRING
Solyc10g054330.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g054330.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g054330.1.1Uncharacterized protein (261 aa)    
Predicted Functional Partners:
Solyc10g006990.2.1
Uncharacterized protein (521 aa)
     
 
  0.764
Solyc06g082480.2.1
Uncharacterized protein (833 aa)
     
 
  0.764
Solyc01g090860.2.1
Uncharacterized protein (1552 aa)
     
 
  0.764
Solyc12g017860.1.1
Uncharacterized protein (940 aa)
     
 
  0.744
Solyc05g047520.2.1
Uncharacterized protein (936 aa)
     
 
  0.744
Solyc01g103080.2.1
Uncharacterized protein (991 aa)
     
 
  0.744
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
       
    0.678
Solyc12g008750.1.1
Uncharacterized protein (607 aa)
       
  0.669
Solyc02g085570.2.1
BAC19.11 (558 aa)
       
  0.669
Solyc02g062920.2.1
Uncharacterized protein (560 aa)
       
  0.669
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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