STRINGSTRING
Solyc10g055680.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g055680.1.1" - Methyltransferase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g055680.1.1Methyltransferase (357 aa)    
Predicted Functional Partners:
Solyc06g076410.2.1
C-4 methyl sterol oxidase (269 aa)
     
  0.973
Solyc06g082980.2.1
COSII_At1g20050 (221 aa)
         
  0.929
CYP51
Obtusifoliol 14alpha-demethylase (487 aa)
     
 
  0.846
Solyc04g077150.2.1
Uncharacterized protein (129 aa)
       
 
  0.813
Solyc05g008680.1.1
Methyltransferase (363 aa)
   
   
 
0.801
Solyc01g111830.2.1
Methyltransferase (358 aa)
   
   
 
0.801
Solyc02g086190.1.1
Uncharacterized protein (257 aa)
     
 
  0.783
Solyc02g086180.2.1
Uncharacterized protein (271 aa)
     
 
  0.783
Solyc02g063240.2.1
Uncharacterized protein (271 aa)
     
 
  0.783
Solyc05g047580.2.1
Terpene cyclase/mutase family member (731 aa)
   
 
 
  0.765
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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