STRINGSTRING
Solyc10g078380.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g078380.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g078380.1.1Uncharacterized protein (261 aa)    
Predicted Functional Partners:
Cry1b
Cryptochrome 1b (583 aa)
       
  0.838
Solyc12g042910.1.1
Uncharacterized protein (539 aa)
       
  0.838
LOC543596
Cryptochrome 2 (635 aa)
       
  0.838
Solyc09g075180.2.1
DNA photolyase protein (452 aa)
       
  0.838
Solyc08g079530.2.1
Uncharacterized protein (488 aa)
       
  0.838
CRY3
Cryptochrome DASH, chloroplastic/mitochondrial ; May have a photoreceptor function and might bind ss- and ds-DNA in a sequence non-specific manner. Lacks photolyase activity. Has a potential role in detecting the dawn and dusk transitions and, consequently, in circadian input pathways (577 aa)
       
  0.838
LOC544219
Cryptochrome 1 (679 aa)
       
  0.838
Solyc06g053630.2.1
Serine/threonine-protein phosphatase (322 aa)
       
      0.720
Solyc06g030490.2.1
Serine/threonine-protein phosphatase (304 aa)
       
      0.720
Solyc05g055060.2.1
Serine/threonine-protein phosphatase (325 aa)
       
      0.720
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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