STRINGSTRING
Solyc10g078540.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g078540.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g078540.1.1Uncharacterized protein (194 aa)    
Predicted Functional Partners:
Solyc12g038980.1.1
Uncharacterized protein (155 aa)
     
  0.995
Solyc02g093460.2.1
Uncharacterized protein (539 aa)
     
  0.993
Solyc02g081810.2.1
Uncharacterized protein (597 aa)
     
  0.993
Solyc03g025270.2.1
Uncharacterized protein (314 aa)
   
 
  0.972
Solyc09g092080.2.1
Uncharacterized protein (128 aa)
     
  0.962
Solyc09g011420.2.1
Annotation not available (128 aa)
     
  0.962
Solyc01g080830.2.1
Uncharacterized protein (180 aa)
     
  0.962
Solyc12g042650.1.1
40S ribosomal protein S12 (141 aa)
     
  0.941
Solyc03g083290.2.1
40S ribosomal protein S12 (141 aa)
     
  0.941
Solyc01g103800.2.1
40S ribosomal protein S12 (143 aa)
     
  0.941
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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