STRINGSTRING
gdh1 protein (Solanum lycopersicum) - STRING interaction network
"gdh1" - Glutamate dehydrogenase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdh1Glutamate dehydrogenase (411 aa)    
Predicted Functional Partners:
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
   
  0.999
Solyc03g063560.2.1
Uncharacterized protein (1621 aa)
   
  0.999
GAD2
Glutamate decarboxylase isoform2 (503 aa)
         
  0.977
LOC544313
Glutamate decarboxylase ; Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis (By similarity) (502 aa)
         
  0.977
Solyc03g043950.2.1
N-acetyl-glutamate synthase (603 aa)
         
  0.960
GS1
Glutamine synthetase (354 aa)
   
 
  0.958
Solyc06g063090.2.1
Uncharacterized protein (542 aa)
   
 
  0.954
Solyc05g013380.2.1
Uncharacterized protein (481 aa)
   
 
  0.954
Solyc03g123610.2.1
Uncharacterized protein (606 aa)
   
 
  0.954
Solyc03g123600.2.1
Uncharacterized protein (484 aa)
   
 
  0.954
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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