• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc10g079510.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g079510.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g079510.1.1annotation not available (1243 aa)    
Predicted Functional Partners:
101251406
annotation not available (768 aa)
   
 
  0.897
GTF2H2
Uncharacterized protein; General transcription factor II H2 (316 aa)
     
 
  0.882
101244148
RNA polymerase II transcription factor B subunit 2; Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA (453 aa)
     
 
  0.877
101251518
annotation not available (608 aa)
       
 
  0.877
101253215
annotation not available (419 aa)
     
 
  0.870
101265536
Uncharacterized protein; Cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (188 aa)
       
 
  0.866
101248303
Uncharacterized protein; Transcription coactivators (1237 aa)
     
  0.861
101258663
Uncharacterized protein; Basal transcription factor complex subunit-related (290 aa)
     
 
  0.861
Solyc01g068260.2.1
Uncharacterized protein; Transcription coactivators (983 aa)
     
  0.860
101268839
Unknown protein; Has 62 Blast hits to 62 proteins in 27 species- Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink) (138 aa)
           
  0.840
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (10%) [HD]