STRINGSTRING
Solyc10g079620.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g079620.1.1" - Haloacid dehalogenase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g079620.1.1Haloacid dehalogenase (295 aa)    
Predicted Functional Partners:
Solyc02g081830.2.1
Uncharacterized protein (256 aa)
   
     
  0.648
Solyc04g056540.2.1
Uncharacterized protein (603 aa)
   
 
    0.632
Solyc03g098140.2.1
Uncharacterized protein (343 aa)
       
  0.558
Solyc08g081030.1.1
Uncharacterized protein (380 aa)
 
 
 
  0.545
Solyc10g086000.1.1
Uncharacterized protein (730 aa)
       
      0.533
Solyc07g064810.2.1
Uncharacterized protein (588 aa)
       
      0.533
Solyc03g111610.2.1
Uncharacterized protein (317 aa)
     
 
  0.518
Solyc09g090750.2.1
Uncharacterized protein (250 aa)
         
  0.499
Solyc06g076300.2.1
Uncharacterized protein (204 aa)
           
  0.495
Solyc02g069410.2.1
Uncharacterized protein (368 aa)
           
  0.495
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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