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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc10g080000.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g080000.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g080000.1.1annotation not available (129 aa)    
Predicted Functional Partners:
Solyc01g028930.2.1
annotation not available (203 aa)
     
 
  0.950
Solyc11g012150.1.1
Uncharacterized protein; Transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (500 aa)
     
 
  0.941
101248675
annotation not available (319 aa)
     
 
  0.941
101264221
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.940
101251406
annotation not available (768 aa)
     
 
  0.939
101244156
Uncharacterized protein; DNA-directed RNA polymerase, RBP11-like (116 aa)
     
 
  0.937
Solyc06g064890.2.1
annotation not available (250 aa)
     
 
  0.937
Solyc10g007650.2.1
annotation not available (52 aa)
     
 
  0.937
101250286
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation (106 aa)
     
 
  0.936
101244295
annotation not available (401 aa)
     
 
  0.936
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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