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101255044 protein (Solanum lycopersicum) - STRING interaction network
"101255044" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101255044Uncharacterized protein; RNA binding (RRM/RBD/RNP motifs) family protein (129 aa)    
Predicted Functional Partners:
101263737
Uncharacterized protein; DEAD box RNA helicase (RH3) (746 aa)
     
 
  0.756
Solyc08g045850.2.1
Uncharacterized protein; Pentatricopeptide repeat (PPR-like) superfamily protein (699 aa)
       
 
  0.704
Solyc04g076370.2.1
annotation not available (441 aa)
       
 
  0.689
cdc5
CDC5-like protein (987 aa)
     
 
  0.618
TNPO1
Uncharacterized protein; Transportin 1 (890 aa)
     
 
  0.616
101263464
annotation not available (521 aa)
     
 
  0.606
Solyc07g007210.2.1
annotation not available (925 aa)
     
 
  0.597
101265974
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (438 aa)
     
 
  0.592
101252330
Protein kinase superfamily protein (646 aa)
       
 
  0.582
101245685
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- mRNA splicing factor, Cwf21 (InterPro-IPR013170); Has 30201 Blast hits to 17322 proteins in 780 sp /.../ Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (639 aa)
       
 
  0.581
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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