STRINGSTRING
Solyc10g084450.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g084450.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g084450.1.1Uncharacterized protein (193 aa)    
Predicted Functional Partners:
Solyc09g018730.2.1
Ubiquitin carboxyl-terminal hydrolase (315 aa)
       
  0.896
Solyc04g016370.2.1
Uncharacterized protein (1539 aa)
     
  0.797
Solyc06g043170.2.1
Uncharacterized protein (716 aa)
     
    0.790
Solyc11g069370.1.1
RuvB-like helicase (455 aa)
       
    0.739
Solyc06g062350.2.1
RuvB-like helicase (455 aa)
       
    0.739
Solyc03g063220.1.1
Uncharacterized protein (1608 aa)
     
    0.614
Solyc09g089660.2.1
Uncharacterized protein (539 aa)
       
    0.533
Solyc07g032510.2.1
Uncharacterized protein (873 aa)
     
  0.530
Solyc02g084620.2.1
Uncharacterized protein (832 aa)
     
  0.530
Solyc12g037980.1.1
Uncharacterized protein (435 aa)
       
    0.517
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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