STRINGSTRING
Solyc10g086000.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g086000.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g086000.1.1Uncharacterized protein (730 aa)    
Predicted Functional Partners:
Solyc04g049670.2.1
Uncharacterized protein (633 aa)
         
 
0.800
Solyc07g064810.2.1
Uncharacterized protein (588 aa)
     
      0.704
Solyc10g007390.2.1
Uncharacterized protein (475 aa)
       
      0.600
Solyc09g065120.2.1
Uncharacterized protein (576 aa)
       
      0.600
Solyc07g006520.2.1
Uncharacterized protein (536 aa)
       
      0.600
Solyc02g072130.2.1
Uncharacterized protein (475 aa)
       
      0.600
Solyc10g079620.1.1
Haloacid dehalogenase (295 aa)
       
      0.533
Solyc09g075890.2.1
Uncharacterized protein (256 aa)
       
      0.533
Solyc09g010940.2.1
Uncharacterized protein (293 aa)
       
      0.533
Solyc07g055980.2.1
Uncharacterized protein (338 aa)
       
      0.533
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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