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STRINGSTRING
Solyc10g086640.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g086640.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g086640.1.1annotation not available (258 aa)    
Predicted Functional Partners:
Solyc03g112740.1.1
annotation not available (184 aa)
       
 
  0.819
KN1
Homeotic protein knotted-1; Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5’-TGAC-3’ (355 aa)
       
 
0.819
T6
Homeobox protein knotted-1-like LET6; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)
       
 
0.812
101264075
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (216 aa)
       
 
  0.763
101255817
Pectinesterase; Pectin lyase-like superfamily protein (354 aa)
           
  0.694
TKn3
Knotted 3 protein (320 aa)
       
 
0.680
101267286
annotation not available (306 aa)
           
  0.675
101256819
annotation not available (338 aa)
           
  0.675
101263665
annotation not available (283 aa)
           
  0.647
ERF4
Ethylene response factor 4 (201 aa)
       
 
  0.583
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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