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LOC544060 protein (Solanum lycopersicum) - STRING interaction network
"LOC544060" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC544060Uncharacterized protein; Extensin (Class II) (619 aa)    
Predicted Functional Partners:
101264233
Hydroxyproline-rich glycoprotein family protein (416 aa)
           
  0.699
XTH16
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues; Belongs to the glycosyl hydrolase 16 family (296 aa)
           
  0.679
101251532
Glycosyl hydrolase family protein (793 aa)
           
  0.679
Solyc08g074590.2.1
annotation not available (229 aa)
           
  0.597
Solyc08g074580.2.1
annotation not available (128 aa)
           
  0.597
101246061
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (531 aa)
     
   
  0.580
101248083
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (533 aa)
     
   
  0.580
Solyc04g071080.1.1
annotation not available (479 aa)
     
   
  0.576
LOC544158
Uncharacterized protein; Extensin (291 aa)
     
   
  0.576
101255985
DNAse I-like superfamily protein (558 aa)
           
  0.572
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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