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STRINGSTRING
Solyc11g005250.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g005250.1.1" - SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein in Solanum lycopersicum
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g005250.1.1SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (1376 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.907
cdc5
CDC5-like protein (987 aa)
     
      0.849
Solyc01g034150.2.1
Uncharacterized protein; Y-family DNA polymerase H (713 aa)
   
 
  0.811
101251046
annotation not available (146 aa)
     
 
  0.789
Suv
annotation not available (160 aa)
     
 
  0.789
101253818
annotation not available (146 aa)
     
 
  0.789
Solyc02g091120.2.1
DNA LIGASE 6 (1473 aa)
     
 
  0.771
101268074
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
           
  0.745
Solyc01g099220.2.1
DNA polymerase; Recovery protein 3 (1947 aa)
   
 
  0.658
Solyc01g107510.2.1
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3’-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents (1045 aa)
   
 
  0.655
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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