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STRINGSTRING
Solyc11g005460.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g005460.1.1" - ENTH/VHS/GAT family protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g005460.1.1ENTH/VHS/GAT family protein (232 aa)    
Predicted Functional Partners:
101255602
annotation not available (241 aa)
           
  0.885
Solyc07g063300.2.1
Uncharacterized protein; Regulator of chromosome condensation (RCC1) family protein (486 aa)
       
 
  0.884
101245484
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (267 aa)
           
  0.883
Solyc01g099970.2.1
F-box family protein (619 aa)
           
  0.852
101249869
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (741 aa)
     
   
  0.737
101264788
annotation not available (524 aa)
           
  0.629
101253195
annotation not available (537 aa)
           
  0.629
Solyc08g083120.2.1
Uncharacterized protein; Ubiquitin (128 aa)
       
      0.593
Solyc08g008590.2.1
annotation not available (136 aa)
       
      0.593
Solyc06g053210.2.1
annotation not available (188 aa)
       
      0.593
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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