STRINGSTRING
Solyc11g007580.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g007580.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g007580.1.1Uncharacterized protein (1869 aa)    
Predicted Functional Partners:
Solyc07g062430.2.1
Uncharacterized protein (343 aa)
       
 
  0.927
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.880
Solyc04g016530.2.1
DNA-(apurinic or apyrimidinic site) lyase (539 aa)
     
  0.796
Solyc03g111600.2.1
DNA-(apurinic or apyrimidinic site) lyase (377 aa)
     
  0.796
Solyc03g033530.2.1
Uncharacterized protein (591 aa)
     
  0.796
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
   
  0.702
Solyc11g008520.1.1
Uncharacterized protein (1428 aa)
   
 
  0.678
DCL1
Endoribonuclease Dicer homolog 1 (1888 aa)
   
 
  0.678
Solyc07g005030.2.1
Uncharacterized protein (1536 aa)
   
 
  0.678
Solyc06g048960.2.1
Uncharacterized protein (1399 aa)
   
 
  0.678
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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