STRINGSTRING
Solyc11g008730.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g008730.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g008730.1.1Uncharacterized protein (313 aa)    
Predicted Functional Partners:
Solyc05g055890.2.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
     
 
  0.591
Solyc05g051790.2.1
Uncharacterized protein (188 aa)
     
 
    0.546
Solyc10g081370.1.1
Uncharacterized protein ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
     
 
    0.544
Solyc09g075130.2.1
Uncharacterized protein (109 aa)
     
 
    0.544
Solyc05g053510.1.1
Uncharacterized protein (207 aa)
     
 
    0.540
Solyc04g040170.2.1
Uncharacterized protein (227 aa)
     
 
    0.540
Solyc03g025570.2.1
Uncharacterized protein (117 aa)
     
 
    0.540
Solyc01g098320.2.1
Uncharacterized protein (227 aa)
     
 
    0.540
Solyc09g092080.2.1
Uncharacterized protein (128 aa)
     
 
    0.538
Solyc09g011420.2.1
Annotation not available (128 aa)
     
 
    0.538
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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