STRINGSTRING
Solyc11g008830.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g008830.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g008830.1.1Uncharacterized protein (230 aa)    
Predicted Functional Partners:
LOC543604
Phantastica (360 aa)
       
 
  0.850
KN1
Homeotic protein knotted-1 ; Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5’-TGAC-3’ (355 aa)
           
  0.530
kn4
Knotted protein TKN4 (335 aa)
           
  0.516
Solyc11g011770.1.1
Uncharacterized protein (462 aa)
           
  0.497
Solyc05g051060.2.1
Uncharacterized protein (284 aa)
           
  0.497
TKn3
Knotted 3 protein (320 aa)
           
  0.491
Solyc08g079100.2.1
Uncharacterized protein (216 aa)
           
  0.491
Solyc01g091010.2.1
Uncharacterized protein (218 aa)
           
  0.491
T6
Homeobox protein knotted-1-like LET6 ; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)
           
  0.487
Solyc08g005260.1.1
Uncharacterized protein (361 aa)
           
  0.480
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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