STRINGSTRING
Solyc11g009000.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g009000.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g009000.1.1Uncharacterized protein (225 aa)    
Predicted Functional Partners:
Solyc04g005190.2.1
Uncharacterized protein (1055 aa)
   
 
  0.870
Solyc11g019950.1.1
Uncharacterized protein (486 aa)
     
  0.565
Solyc08g066020.1.1
Uncharacterized protein (511 aa)
     
  0.565
Solyc06g072320.2.1
Uncharacterized protein (489 aa)
     
  0.565
Solyc06g034150.2.1
Uncharacterized protein (468 aa)
     
  0.565
Solyc06g030590.1.1
Uncharacterized protein (430 aa)
     
  0.565
Solyc03g098220.2.1
Uncharacterized protein (489 aa)
     
  0.565
Solyc03g119200.2.1
Uncharacterized protein (449 aa)
       
  0.546
LOC778225
Isochorismate synthase (580 aa)
       
  0.530
Solyc05g014970.2.1
Urea amidohydrolase (834 aa)
           
  0.509
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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