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GGPS1 protein (Solanum lycopersicum) - STRING interaction network
"GGPS1" - Geranylgeranyl pyrophosphate synthase 1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GGPS1Geranylgeranyl pyrophosphate synthase 1 (365 aa)    
Predicted Functional Partners:
IPI
Isopentenyl diphosphate isomerase (235 aa)
   
 
  0.959
IPI2
Plastid isopentenyl diphosphate isomerase (294 aa)
   
 
  0.959
Solyc03g115980.1.1
Geranylgeranyl reductase (464 aa)
   
  0.951
FTB
Farnesyl-protein transferase beta subunit (457 aa)
       
  0.943
FPS1
Farnesyl pyrophosphate synthase (342 aa)
         
  0.941
Solyc10g005840.2.1
Uncharacterized protein (248 aa)
         
  0.941
Solyc10g005820.1.1
Uncharacterized protein (119 aa)
         
  0.941
Solyc01g088310.2.1
Uncharacterized protein (451 aa)
     
  0.941
Solyc01g109300.2.1
ISPH protein (461 aa)
   
 
  0.939
CPT4
Cis-prenyltransferase 4 (308 aa)
   
  0.937
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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