STRINGSTRING
Solyc11g011460.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g011460.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g011460.1.1Uncharacterized protein (764 aa)    
Predicted Functional Partners:
Solyc09g090740.2.1
Uncharacterized protein (799 aa)
     
   
  0.548
Solyc11g013030.1.1
DIS3-like exonuclease 2 ; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1092 aa)
     
 
  0.501
Solyc09g010870.2.1
Uncharacterized protein (793 aa)
     
 
  0.501
Solyc02g082460.2.1
Uncharacterized protein (935 aa)
     
 
  0.501
Solyc04g073980.2.1
Uncharacterized protein (649 aa)
           
  0.477
Solyc01g028800.1.1
Uncharacterized protein (741 aa)
           
  0.477
Solyc03g123640.2.1
Uncharacterized protein (762 aa)
     
   
  0.450
DEAD30
DEAD-box ATP-dependent RNA helicase 36-like (488 aa)
     
   
  0.432
Solyc12g020050.1.1
Putative DNA-binding protein (624 aa)
     
   
  0.407
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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