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Solyc11g012150.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g012150.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g012150.1.1Uncharacterized protein; Transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (500 aa)    
Predicted Functional Partners:
101258739
annotation not available (472 aa)
     
 
  0.994
Solyc06g064890.2.1
annotation not available (250 aa)
     
 
  0.991
101264221
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.988
GTF2H2
Uncharacterized protein; General transcription factor II H2 (316 aa)
       
 
  0.981
Solyc01g028930.2.1
annotation not available (203 aa)
     
 
  0.977
101244148
RNA polymerase II transcription factor B subunit 2; Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA (453 aa)
     
 
  0.976
101244156
Uncharacterized protein; DNA-directed RNA polymerase, RBP11-like (116 aa)
     
 
  0.976
101248675
annotation not available (319 aa)
     
 
  0.974
101259186
annotation not available (144 aa)
     
 
  0.969
101257024
Uncharacterized protein; Transcription initiation factor IIF, beta subunit (276 aa)
     
 
  0.969
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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