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Solyc11g019960.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g019960.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g019960.1.1Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Rgp1 (InterPro-IPR014848), /.../globulin E-set (InterPro-IPR014756); Has 144 Blast hits to 140 proteins in 61 species- Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink) (494 aa)    
Predicted Functional Partners:
101246379
annotation not available (1125 aa)
       
 
  0.974
101255401
annotation not available (207 aa)
       
 
  0.844
101262189
annotation not available (207 aa)
       
 
  0.844
101245584
Ras-related small GTP-binding family protein (208 aa)
       
 
  0.844
101244137
annotation not available (696 aa)
     
   
  0.763
101256582
annotation not available (824 aa)
           
  0.694
Solyc03g118660.2.1
Vacuolar protein sorting-associated protein 26 (312 aa)
           
  0.690
101247715
annotation not available (301 aa)
       
 
  0.607
101264233
Hydroxyproline-rich glycoprotein family protein (416 aa)
     
        0.604
101266526
Uncharacterized protein; TRS120 (1185 aa)
     
   
  0.601
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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