STRINGSTRING
Solyc11g020300.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g020300.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g020300.1.1Uncharacterized protein (443 aa)    
Predicted Functional Partners:
Solyc09g031780.2.1
Uncharacterized protein (1005 aa)
     
 
  0.859
CD4B
ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic ; May interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast (923 aa)
     
 
  0.784
CD4A
ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic ; May interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast (926 aa)
     
 
  0.784
Solyc09g074940.1.1
Uncharacterized protein (1403 aa)
     
 
  0.614
Solyc09g075830.2.1
Uncharacterized protein (1675 aa)
           
  0.530
Solyc04g079000.2.1
Uncharacterized protein (293 aa)
           
  0.519
Solyc05g054720.2.1
Uncharacterized protein (271 aa)
           
  0.517
Solyc04g076740.2.1
Uncharacterized protein (271 aa)
           
  0.517
Solyc12g096550.1.1
Uncharacterized protein (546 aa)
           
  0.511
Solyc08g081200.2.1
Uncharacterized protein (315 aa)
       
 
  0.510
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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