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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc11g039890.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g039890.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g039890.1.1annotation not available (167 aa)    
Predicted Functional Partners:
101246938
Uncharacterized protein; Nucleoporin 155 (1481 aa)
     
 
  0.987
101260798
Protein of unknown function (DUF3414) (1874 aa)
     
 
  0.972
101262406
annotation not available (862 aa)
     
 
  0.960
101253565
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species- Ar /.../ 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source- NCBI BLink) (388 aa)
     
 
  0.869
Solyc12g049410.1.1
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 5399 /.../ hits to 5001 proteins in 612 species- Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source- NCBI BLink) (1016 aa)
     
 
  0.869
101264859
Uncharacterized protein; Structural constituent of nuclear pore (758 aa)
     
 
  0.865
101261183
Uncharacterized protein; Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (1393 aa)
     
        0.811
Solyc04g010260.2.1
annotation not available (1175 aa)
     
        0.811
Solyc03g007100.2.1
Uncharacterized protein; Cleavage and polyadenylation specificity factor 160 (1425 aa)
     
        0.707
Solyc03g120880.2.1
Mitotic phosphoprotein N’ end (MPPN) family protein (502 aa)
     
 
  0.642
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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