STRINGSTRING
cel7 protein (Solanum lycopersicum) - STRING interaction network
"cel7" - Endo-1,4-beta-D-glucanase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel7Endo-1,4-beta-D-glucanase (479 aa)    
Predicted Functional Partners:
Solyc01g079500.2.1
DNA helicase (718 aa)
       
      0.988
Solyc06g050200.1.1
Uncharacterized protein (242 aa)
       
      0.953
Solyc06g050180.1.1
Uncharacterized protein (245 aa)
       
      0.953
Solyc12g088530.1.1
Uncharacterized protein (354 aa)
       
      0.899
Solyc12g088520.1.1
Uncharacterized protein (355 aa)
       
      0.899
Solyc12g088500.1.1
Uncharacterized protein (354 aa)
       
      0.899
Solyc12g088470.1.1
Uncharacterized protein (360 aa)
       
      0.899
Solyc04g078310.2.1
Uncharacterized protein (371 aa)
       
      0.899
Solyc10g080950.1.1
Uncharacterized protein (462 aa)
       
      0.714
cycB1.1
B-type cyclin (423 aa)
       
      0.714
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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