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STRINGSTRING
cel7 protein (Solanum lycopersicum) - STRING interaction network
"cel7" - Endoglucanase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cel7Endoglucanase; Endo-1,4-beta-D-glucanase (479 aa)    
Predicted Functional Partners:
101243636
DNA helicase; Minichromosome maintenance (MCM2/3/5) family protein; Belongs to the MCM family (718 aa)
       
      0.982
Solyc06g050200.1.1
annotation not available (242 aa)
       
      0.939
Solyc06g050180.1.1
annotation not available (245 aa)
       
      0.939
Solyc09g010980.1.1
annotation not available (75 aa)
       
      0.888
Solyc05g053050.1.1
Unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (74 aa)
       
      0.888
Solyc06g076310.1.1
annotation not available (83 aa)
       
      0.826
101258635
annotation not available (354 aa)
       
      0.819
101258929
annotation not available (355 aa)
       
      0.819
101255776
annotation not available (354 aa)
       
      0.819
Solyc12g088470.1.1
annotation not available (360 aa)
       
      0.819
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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