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STRINGSTRING
101254056 protein (Solanum lycopersicum) - STRING interaction network
"101254056" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101254056annotation not available (552 aa)    
Predicted Functional Partners:
Solyc07g052340.2.1
Uncharacterized protein; Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (884 aa)
     
 
  0.652
101256461
Unknown protein; Has 119 Blast hits to 96 proteins in 40 species- Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink) (417 aa)
       
      0.548
101243936
annotation not available (861 aa)
     
 
  0.517
Solyc12g017860.1.1
annotation not available (940 aa)
     
 
  0.506
SKIV2L2
annotation not available (936 aa)
     
 
  0.506
101257307
RNA helicase, ATP-dependent, SK12/DOB1 protein (991 aa)
     
 
  0.506
101254341
Uncharacterized protein; EMBRYO DEFECTIVE 140 (856 aa)
     
 
  0.498
101253650
DIS3-like exonuclease 2; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1092 aa)
     
 
  0.496
101247453
Ribonuclease II/R family protein (793 aa)
     
 
  0.496
101263664
Ribonuclease II family protein; Belongs to the RNR ribonuclease family (935 aa)
     
 
  0.496
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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