STRINGSTRING
Solyc11g051010.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g051010.1.1" - Pectinesterase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g051010.1.1Pectinesterase (137 aa)    
Predicted Functional Partners:
Solyc01g090130.1.1
Pectinesterase (127 aa)
   
          0.516
Solyc07g065350.1.1
Pectinesterase (357 aa)
   
          0.511
Solyc12g008530.1.1
Pectinesterase (378 aa)
   
          0.509
Solyc04g080530.2.1
Pectinesterase (347 aa)
   
          0.509
Solyc07g065360.1.1
Pectinesterase (356 aa)
   
          0.508
Solyc05g052120.2.1
Pectinesterase (342 aa)
   
          0.508
Solyc05g052110.2.1
Pectinesterase (368 aa)
   
          0.508
Solyc10g049440.1.1
Pectinesterase (67 aa)
   
          0.507
Solyc02g075620.2.1
Pectinesterase (362 aa)
   
          0.507
Solyc01g109740.2.1
Pectinesterase (343 aa)
   
          0.507
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (6%) [HD]