STRINGSTRING
Solyc11g065740.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g065740.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g065740.1.1Uncharacterized protein (213 aa)    
Predicted Functional Partners:
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
       
      0.930
rbcL
Ribulose bisphosphate carboxylase large chain ; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (477 aa)
     
 
  0.744
Solyc12g062560.1.1
Uncharacterized protein (112 aa)
 
 
 
  0.714
Solyc07g064160.2.1
Uncharacterized protein (354 aa)
     
      0.612
Solyc06g063370.2.1
Type I (26 kD) CP29 polypeptide (286 aa)
       
      0.603
Solyc09g082200.2.1
Uncharacterized protein (555 aa)
   
        0.529
Solyc06g054120.1.1
Uncharacterized protein (495 aa)
   
        0.528
Solyc04g080870.1.1
Uncharacterized protein (86 aa)
   
          0.524
Solyc02g062350.2.1
Uncharacterized protein (270 aa)
   
          0.519
Solyc08g068570.2.1
Uncharacterized protein (498 aa)
   
        0.518
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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