STRINGSTRING
Solyc11g066370.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g066370.1.1" - DNA ligase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g066370.1.1DNA ligase (802 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.992
Solyc07g005020.2.1
DNA helicase (737 aa)
   
   
  0.976
Solyc07g005880.2.1
Uncharacterized protein (1012 aa)
     
  0.927
Solyc01g102370.2.1
Uncharacterized protein ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts [...] (382 aa)
   
  0.915
Solyc02g070780.2.1
DNA helicase (787 aa)
     
   
  0.912
Solyc01g110130.2.1
DNA helicase (831 aa)
     
   
  0.912
Solyc02g091120.2.1
DNA ligase (1473 aa)
   
0.910
Solyc11g040120.1.1
DNA helicase (860 aa)
     
   
  0.903
Solyc01g105530.2.1
Uncharacterized protein (75 aa)
     
   
  0.903
Solyc01g105520.2.1
Uncharacterized protein (600 aa)
     
   
  0.903
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (15%) [HD]