STRINGSTRING
SlIPT5 protein (Solanum lycopersicum) - STRING interaction network
"SlIPT5" - Isopentenyltransferase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SlIPT5Isopentenyltransferase (467 aa)    
Predicted Functional Partners:
Solyc01g109300.2.1
ISPH protein (461 aa)
       
  0.870
Solyc12g014190.1.1
Uncharacterized protein (449 aa)
   
   
0.861
FPS1
Farnesyl pyrophosphate synthase (342 aa)
       
  0.819
GGPS1
Geranylgeranyl pyrophosphate synthase 1 (365 aa)
       
  0.819
Solyc10g005840.2.1
Uncharacterized protein (248 aa)
       
  0.819
Solyc10g005820.1.1
Uncharacterized protein (119 aa)
       
  0.819
Solyc09g008920.2.1
Uncharacterized protein (334 aa)
       
  0.819
GPS
Geranyl pyrophosphate synthase (415 aa)
       
  0.819
Solyc07g064660.1.1
Uncharacterized protein (291 aa)
       
  0.819
GGPS2
Geranylgeranyl pyrophosphate synthase 2 (363 aa)
       
  0.819
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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