STRINGSTRING
CPA protein (Solanum lycopersicum) - STRING interaction network
"CPA" - N-carbamoylputrescine amidase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPAN-carbamoylputrescine amidase ; Involved in polyamine biosynthesis (300 aa)    
Predicted Functional Partners:
Solyc12g038970.1.1
Uncharacterized protein (375 aa)
   
  0.997
SPM1
Putative spermine synthase (356 aa)
   
 
  0.974
spdsyn
Spermidine synthase (342 aa)
   
 
  0.971
Solyc04g026030.2.1
Uncharacterized protein (309 aa)
   
 
  0.971
Solyc06g053520.2.1
Uncharacterized protein (316 aa)
   
 
  0.953
Solyc08g014310.2.1
Uncharacterized protein (340 aa)
   
 
  0.906
pmt
Putrescine N-methyltransferase (340 aa)
   
 
  0.906
ODC
Ornithine decarboxylase (431 aa)
       
  0.905
Solyc03g098310.1.1
Uncharacterized protein (397 aa)
       
  0.905
Solyc03g098300.1.1
Uncharacterized protein (388 aa)
       
  0.905
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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