STRINGSTRING
MBD5 protein (Solanum lycopersicum) - STRING interaction network
MBD5 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBD5MBD5 (248 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
           
  0.692
Solyc11g073080.1.1
Uncharacterized protein (220 aa)
           
  0.532
Solyc05g047450.1.1
Uncharacterized protein (350 aa)
           
  0.497
Solyc12g009590.1.1
Uncharacterized protein (434 aa)
           
  0.489
Solyc07g008170.2.1
Uncharacterized protein (339 aa)
           
  0.489
Solyc06g068140.2.1
Uncharacterized protein (353 aa)
           
  0.489
Solyc04g074250.1.1
Uncharacterized protein (1177 aa)
           
  0.489
Solyc11g005250.1.1
Uncharacterized protein (1376 aa)
     
  0.473
Solyc06g084400.2.1
Uncharacterized protein (168 aa)
           
  0.461
Solyc07g032510.2.1
Uncharacterized protein (873 aa)
     
  0.436
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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