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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
MBD5 protein (Solanum lycopersicum) - STRING interaction network
"MBD5" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MBD5annotation not available (248 aa)    
Predicted Functional Partners:
Solyc11g073080.1.1
Uncharacterized protein; methyl-CPG-binding domain 7 (220 aa)
     
   
  0.851
DDB1
DNA damage-binding protein 1; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
 
  0.809
Solyc02g085390.2.1
annotation not available (811 aa)
       
 
  0.807
101248358
annotation not available (771 aa)
       
 
  0.807
101262870
annotation not available (487 aa)
       
 
  0.774
101261366
HSP20-like chaperones superfamily protein (230 aa)
     
 
  0.771
101244001
Phragmoplastin interacting protein 1 (338 aa)
           
  0.739
Solyc04g082740.2.1
HSP20-like chaperones superfamily protein; Belongs to the small heat shock protein (HSP20) family (197 aa)
       
 
  0.682
101266717
annotation not available (153 aa)
       
 
  0.682
101249832
annotation not available (168 aa)
           
  0.642
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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