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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc11g069100.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc11g069100.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc11g069100.1.1annotation not available (170 aa)    
Predicted Functional Partners:
DCL1
Uncharacterized protein; Dicer-like 1; Belongs to the helicase family. Dicer subfamily (1888 aa)
     
 
  0.749
DCL4
Uncharacterized protein; Dicer-like 4; Belongs to the helicase family. Dicer subfamily (1536 aa)
     
 
  0.737
101257657
DsRNA-binding protein (433 aa)
       
 
  0.733
101264590
annotation not available (936 aa)
           
  0.696
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
      0.687
DCL3
Uncharacterized protein; Dicer-like 3 (1430 aa)
     
 
  0.659
Solyc08g067200.1.1
annotation not available (291 aa)
     
 
  0.659
Solyc07g007210.2.1
annotation not available (925 aa)
       
      0.639
101250741
ARM repeat superfamily protein (1199 aa)
     
 
  0.635
DCL
Protein DCL, chloroplastic; Has a function in the early stage of chloroplast development and palisade cell morphogenesis. Required for correct plastid ribosome assembly. Required for processing and maturation of 4.5S rRNA (224 aa)
           
  0.631
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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