Solyc11g069590.1.1 protein (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Solyc11g069590.1.1

Uncharacterized protein (487 aa)

Predicted Functional Partners:

Solyc12g056940.1.1

0.979

Solyc12g007100.1.1

0.801

Solyc01g056690.2.1

0.784

Solyc12g044540.1.1

0.710

Solyc01g096490.2.1

0.697

Solyc12g096520.1.1

0.680

Solyc12g096020.1.1

0.680

Solyc12g042570.1.1

0.680

Solyc12g010450.1.1

0.680

Solyc10g085370.1.1

0.680

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g056690.2.1	Solyc01g096490.2.1	Uncharacterized protein	Uncharacterized protein	0.806
Solyc01g056690.2.1	Solyc10g085370.1.1	Uncharacterized protein	Uncharacterized protein	0.453
Solyc01g056690.2.1	Solyc11g069590.1.1	Uncharacterized protein	Uncharacterized protein	0.784
Solyc01g056690.2.1	Solyc12g007100.1.1	Uncharacterized protein	Uncharacterized protein	0.589
Solyc01g056690.2.1	Solyc12g010450.1.1	Uncharacterized protein	Uncharacterized protein	0.447
Solyc01g056690.2.1	Solyc12g042570.1.1	Uncharacterized protein	Uncharacterized protein	0.450
Solyc01g056690.2.1	Solyc12g044540.1.1	Uncharacterized protein	Uncharacterized protein	0.420
Solyc01g056690.2.1	Solyc12g096020.1.1	Uncharacterized protein	Uncharacterized protein	0.451
Solyc01g056690.2.1	Solyc12g096520.1.1	Uncharacterized protein	Uncharacterized protein	0.445
Solyc01g096490.2.1	Solyc01g056690.2.1	Uncharacterized protein	Uncharacterized protein	0.806
Solyc01g096490.2.1	Solyc10g085370.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc11g069590.1.1	Uncharacterized protein	Uncharacterized protein	0.697
Solyc01g096490.2.1	Solyc12g007100.1.1	Uncharacterized protein	Uncharacterized protein	0.583
Solyc01g096490.2.1	Solyc12g010450.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc12g042570.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc12g096020.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc01g096490.2.1	Solyc12g096520.1.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc10g085370.1.1	Solyc01g056690.2.1	Uncharacterized protein	Uncharacterized protein	0.453
Solyc10g085370.1.1	Solyc01g096490.2.1	Uncharacterized protein	Uncharacterized protein	0.599
Solyc10g085370.1.1	Solyc11g069590.1.1	Uncharacterized protein	Uncharacterized protein	0.680

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About