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LOC543882 protein (Solanum lycopersicum) - STRING interaction network
"LOC543882" - Putative FtsH protease in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543882Putative FtsH protease (714 aa)    
Predicted Functional Partners:
Solyc00g042130.1.1
annotation not available (704 aa)
     
 
  0.849
101260166
Uncharacterized protein; Zinc finger C-x8-C-x5-C-x3-H type family protein (374 aa)
     
        0.801
Solyc01g006800.2.1
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (389 aa)
     
   
  0.779
Solyc03g007000.2.1
Peptidase family M48 family protein (400 aa)
     
 
  0.704
101256416
Zinc finger protein-related (694 aa)
       
 
  0.695
101254184
Uncharacterized protein; Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (203 aa)
       
      0.689
101267415
Small nuclear ribonucleoprotein family protein (98 aa)
           
  0.685
101256760
annotation not available (703 aa)
           
  0.685
101259818
Ribonuclease P protein subunit P38-related (823 aa)
           
  0.683
101255048
annotation not available (93 aa)
     
 
  0.655
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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