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STRINGSTRING
Solyc12g005230.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g005230.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g005230.1.1annotation not available (987 aa)    
Predicted Functional Partners:
Solyc04g008630.2.1
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle (899 aa)
     
   
  0.807
101255009
Uncharacterized protein; Homolog of yeast autophagy 18 (ATG18) B (365 aa)
     
      0.755
101246793
ThiF family protein (715 aa)
     
   
  0.694
101262344
Autophagocytosis-associated family protein (236 aa)
           
  0.693
101265306
Serine carboxypeptidase-like 51; Belongs to the peptidase S10 family (460 aa)
           
  0.681
Solyc02g084500.2.1
annotation not available (227 aa)
     
      0.646
Solyc02g075630.1.1
annotation not available (189 aa)
     
      0.646
Solyc02g074590.2.1
annotation not available (70 aa)
     
      0.646
SlATG4
annotation not available (391 aa)
     
   
  0.579
Solyc03g111740.2.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (482 aa)
           
  0.571
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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