STRINGSTRING
Solyc12g005680.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g005680.1.1" - Potassium transporter in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g005680.1.1Potassium transporter ; Potassium transporter (799 aa)    
Predicted Functional Partners:
LKT1
Potassium channel (883 aa)
           
  0.532
Solyc02g021440.2.1
Non-specific serine/threonine protein kinase (457 aa)
       
 
  0.490
Solyc07g014690.2.1
Uncharacterized protein (555 aa)
         
  0.490
HKT1;2
Sodium transporter HKT1;2 (391 aa)
         
  0.490
Solyc04g078640.1.1
Uncharacterized protein (148 aa)
           
  0.483
Solyc01g094290.2.1
Uncharacterized protein (1198 aa)
           
  0.478
PRO2
Delta-1-pyrroline-5-carboxylate synthase Glutamate 5-kinase Gamma-glutamyl phosphate reductase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants (720 aa)
         
  0.441
Solyc06g019170.2.1
Uncharacterized protein (717 aa)
         
  0.441
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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