STRINGSTRING
Solyc12g006180.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g006180.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g006180.1.1Uncharacterized protein (438 aa)    
Predicted Functional Partners:
Solyc02g070240.2.1
Uncharacterized protein (671 aa)
     
 
  0.855
Solyc02g021760.2.1
Uncharacterized protein (689 aa)
     
 
  0.855
Solyc12g035360.1.1
Uncharacterized protein (333 aa)
       
 
  0.662
Solyc02g083940.2.1
Uncharacterized protein (332 aa)
       
 
  0.662
Solyc09g065080.1.1
Uncharacterized protein (225 aa)
       
 
  0.645
Solyc02g069160.2.1
Uncharacterized protein (509 aa)
       
 
  0.645
Solyc06g053630.2.1
Serine/threonine-protein phosphatase (322 aa)
     
      0.611
Solyc06g030490.2.1
Serine/threonine-protein phosphatase (304 aa)
     
      0.611
Solyc05g055060.2.1
Serine/threonine-protein phosphatase (325 aa)
     
      0.611
Solyc06g062680.1.1
Uncharacterized protein (531 aa)
     
  0.593
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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