• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g006180.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g006180.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g006180.1.1annotation not available (438 aa)    
Predicted Functional Partners:
TNPO1
Uncharacterized protein; Transportin 1 (890 aa)
     
 
  0.815
101266448
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (605 aa)
     
 
  0.656
101263462
annotation not available (436 aa)
       
 
  0.641
101249869
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (741 aa)
     
 
  0.564
101255208
Auxin-responsive family protein (245 aa)
           
  0.549
101247946
annotation not available (87 aa)
           
  0.540
101244858
annotation not available (87 aa)
           
  0.540
101265334
Protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (1080 aa)
     
        0.539
Solyc12g035360.1.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (333 aa)
     
 
  0.537
101258611
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (332 aa)
     
 
  0.537
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (11%) [HD]