STRINGSTRING
Solyc12g006290.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g006290.1.1" - Reticulon-like protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g006290.1.1Reticulon-like protein (233 aa)    
Predicted Functional Partners:
Solyc09g031600.2.1
Uncharacterized protein (473 aa)
       
      0.805
Solyc06g050550.2.1
Uncharacterized protein (541 aa)
       
      0.805
Solyc04g076610.1.1
Uncharacterized protein (469 aa)
           
  0.463
Solyc12g062790.1.1
Uncharacterized protein (217 aa)
     
        0.459
Solyc12g062270.1.1
Uncharacterized protein (87 aa)
     
        0.459
Solyc12g009090.1.1
Uncharacterized protein (223 aa)
     
        0.459
GAD2
Glutamate decarboxylase isoform2 (503 aa)
     
        0.459
Solyc10g055160.1.1
Uncharacterized protein (185 aa)
     
        0.459
Solyc10g055150.1.1
Uncharacterized protein (138 aa)
     
        0.459
Solyc10g055130.1.1
Uncharacterized protein (119 aa)
     
        0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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