STRINGSTRING
Solyc12g006320.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g006320.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g006320.1.1Uncharacterized protein (643 aa)    
Predicted Functional Partners:
Solyc07g047670.2.1
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
 
  0.973
Solyc07g039550.2.1
Uncharacterized protein (1190 aa)
   
  0.972
Solyc01g110990.2.1
Uncharacterized protein (1111 aa)
   
  0.972
Solyc09g090340.1.1
Uncharacterized protein (982 aa)
       
      0.966
Solyc12g099890.1.1
Uncharacterized protein (812 aa)
     
        0.948
Solyc11g020820.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (817 aa)
     
 
  0.926
Solyc11g020810.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (829 aa)
     
 
  0.926
Solyc10g046930.1.1
Uncharacterized protein (766 aa)
     
 
  0.926
cdkB1
B1-type cyclin dependent kinase (303 aa)
       
 
  0.916
Solyc10g009070.2.1
Uncharacterized protein (785 aa)
   
 
0.914
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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