STRINGSTRING
Solyc12g006540.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g006540.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g006540.1.1Uncharacterized protein (180 aa)    
Predicted Functional Partners:
Solyc01g098780.2.1
Uncharacterized protein (167 aa)
     
  0.929
Solyc06g010060.1.1
Uncharacterized protein (112 aa)
     
 
  0.871
Solyc03g116990.1.1
Uncharacterized protein (109 aa)
     
 
  0.871
Solyc03g097750.2.1
Uncharacterized protein (193 aa)
     
 
    0.791
Solyc02g094440.2.1
Signal sequence receptor subunit beta ; TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins (192 aa)
     
 
    0.791
Solyc01g079840.2.1
Uncharacterized protein (448 aa)
 
        0.737
Solyc11g013000.1.1
Uncharacterized protein (210 aa)
     
      0.700
Solyc10g045640.1.1
Uncharacterized protein (214 aa)
     
      0.700
Solyc06g060450.2.1
Uncharacterized protein (215 aa)
     
      0.700
Solyc06g060440.1.1
Uncharacterized protein (213 aa)
     
      0.700
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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