STRINGSTRING
Solyc12g006620.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g006620.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g006620.1.1Uncharacterized protein (511 aa)    
Predicted Functional Partners:
Solyc05g017890.2.1
Uncharacterized protein (1858 aa)
     
  0.807
Solyc01g096600.2.1
Uncharacterized protein (608 aa)
       
  0.804
Solyc11g005110.1.1
Uncharacterized protein (523 aa)
     
      0.721
Solyc04g078830.2.1
Uncharacterized protein (802 aa)
       
  0.662
Solyc11g072180.1.1
Uncharacterized protein (90 aa)
       
  0.631
Solyc01g008990.2.1
Uncharacterized protein (246 aa)
       
  0.631
Solyc01g086890.2.1
Uncharacterized protein (435 aa)
       
      0.618
Solyc01g009990.2.1
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (248 aa)
       
      0.602
Solyc12g099280.1.1
Uncharacterized protein (1130 aa)
     
 
    0.546
Solyc07g005320.2.1
Uncharacterized protein (1380 aa)
     
 
    0.546
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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